Soil bacterial diversity in the Zaamar mining area, Mongolia
DOI:
https://doi.org/10.5564/pib.v38i1.2542Keywords:
mining soil, DNA sequencing technology, bacterial diversityAbstract
The bacterial diversity of the sample BM from the non-interacted mining area was significantly abundant compared to mining interacted samples. Nine phyla were dominant in the bacterial community structure. But in samples from the mining operation area sample VBKB-b and abandoned mining sample are VBKB-b, 3 phyla Firmicutes (59-66%), Actinobacteria (17.4-26.8%), Proteobacteria (11-14%) were dominant in the bacterial community.
126
References
E. J. Gray and D. L. Smith, “Intracellular and extracellular PGPR: commonalities and distinctions in the plant–bacterium signaling processes,” Soil Biol. Biochem., vol. 37, no. 3, pp. 395–412, Mar. 2005, https://doi.org/10.1016/j.soilbio.2004.08.030.
M. A. Polti, J. D. Aparicio, C. S. Benimeli, and M. J. Amoroso, “Simultaneous bioremediation of Cr(VI) and lindane in soil by actinobacteria,” Int. Biodeterior. Biodegrad., vol. 88, pp. 48–55, Mar. 2014, https://doi.org/10.1016/j.ibiod.2013.12.004.
T. Halttunen, S. Salminen, and R. Tahvonen, “Rapid removal of lead and cadmium from water by specific lactic acid bacteria,” Int. J. Food Microbiol., vol. 114, no. 1, pp. 30–35, Feb. 2007, https://doi.org/10.1016/j.ijfoodmicro.2006.10.040.
H. Ji, Y. Zhang, P. Bararunyeretse, and H. Li, “Characterization of microbial communities of soils from gold mine tailings and identification of mercury-resistant strain,” Ecotoxicol. Environ. Saf., vol. 165, pp. 182–193, Dec. 2018, https://doi.org/10.1016/j.ecoenv.2018.09.011.
J. Thorslund, J. Jarsjö, S. R. Chalov, and E. V. Belozerova, “Gold mining impact on riverine heavy metal transport in a sparsely monitored region: the upper Lake Baikal Basin case,” J. Environ. Monit., vol. 14, no. 10, p. 2780, 2012, https://doi.org/10.1039/c2em30643c.
M. Kida, O. Myangan, B. Oyuntsetseg, V. Khakhinov, M. Kawahigashi, and N. Fujitake, “Dissolved organic matter distribution and its association with colloidal aluminum and iron in the Selenga River Basin from Ulaanbaatar to Lake Baikal,” Environ. Sci. Pollut. Res. Int., vol. 25, no. 12, pp. 11948–11957, Apr. 2018, https://doi.org/10.1007/s11356-018-1462-z.
B. Batsaikhan et al., “Hydrochemical evaluation of the influences of mining activities on river water chemistry in central northern Mongolia,” Environ. Sci. Pollut. Res. Int., vol. 24, no. 2, pp. 2019–2034, Jan. 2017, https://doi.org/10.1007/s11356-016-7895-3.
Choidash B, Microbiology practicum. UB Art Science 2007, 2011.
J. G. Caporaso et al., “Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample,” Proc. Natl. Acad. Sci. U. S. A., vol. 108 Suppl 1, no. Suppl 1, pp. 4516–4522, Mar. 2011, https://doi.org/10.1073/pnas.1000080107.
R. C. Edgar, “UPARSE: highly accurate OTU sequences from microbial amplicon reads,” Nat. Methods, vol. 10, no. 10, pp. 996–998, Oct. 2013, https://doi.org/10.1038/nmeth.2604.
A. Chao and C. Chiu, “Species Richness: Estimation and Comparison,” in Wiley StatsRef: Statistics Reference Online, 1st ed., N. Balakrishnan, T. Colton, B. Everitt, W. Piegorsch, F. Ruggeri, and J. L. Teugels, Eds. Wiley, 2016, pp. 1–26. https://doi.org/10.1002/9781118445112.stat03432.pub2.
“rarefaction.single.” https://mothur.org/wiki/rarefaction.single/ (accessed Feb. 13, 2022).
S. F. Stoddard, B. J. Smith, R. Hein, B. R. K. Roller, and T. M. Schmidt, “rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development,” Nucleic Acids Res., vol. 43, no. D1, pp. D593–D598, Jan. 2015, https://doi.org/10.1093/nar/gku1201
“Silva.” https://www.arb-silva.de/ (accessed Feb. 13, 2022).
“Functional Gene Pipeline / Repository.” http://fungene.cme.msu.edu/index.spr (accessed Feb. 13, 2022).
J. G. Caporaso et al., “QIIME allows analysis of high-throughput community sequencing data,” Nat. Methods, vol. 7, no. 5, pp. 335–336, May 2010, https://doi.org/10.1038/nmeth.f.303.
K. E. Giller, E. Witter, and S. P. Mcgrath, “Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review,” Soil Biol. Biochem., vol. 30, no. 10–11, pp. 1389–1414, Sep. 1998, https://doi.org/10.1016/S0038-0717(97)00270-8.
P. Bridge and B. Spooner, “Soil fungi: Diversity and detection,” Plant Soil, vol. 232, pp. 147–154, May 2001, https://doi.org/10.1023/A:1010346305799.
Downloads
Published
How to Cite
License
Copyright (c) 2022 Damdinsuren Narantuya, Choidash Battsetseg, Sodbaatar Naranjargal
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Copyright on any research article in the Proceedings of the Institute of Biology is retained by the author(s).
The authors grant the Proceedings of the Institute of Biology license to publish the article and identify itself as the original publisher.
Articles in the Proceedings of the Institute of Biology are Open Access articles published under a Creative Commons Attribution-NonCommercial 4.0 International License - CC BY NC.
This license permits use, distribution and reproduction in any medium, provided the original work is properly cited.
